Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs17199832 chr7:6722611 T/A 3.13E-7 492 31.18 26.7 50.03 KM Plot
PRAD rs1722755 chr1:201138712 A/G 3.22E-6 494 30.75 31.03 37.9 KM Plot
PRAD rs1725351 chr5:138101586 C/T 6.06E-7 488 31.32 31.13 22.47 KM Plot
PRAD rs172631 chr6:108453782 G/A 2.9E-7 484 31.38 27.72 33.93 KM Plot
PRAD rs17305452 chr7:4247246 G/A 1.1E-8 489 32.4 28.62 17.2 KM Plot
PRAD rs17305543 chr7:4248313 A/G 3.21E-5 494 14.97 27.97 32.27 KM Plot
PRAD rs17314486 chr15:47770315 A/G 1.72E-5 476 31.43 30.27 29.2 KM Plot
PRAD rs17329742 chr2:178791660 G/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs17329956 chr2:178804923 C/T 4.23E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs17338413 chr15:75474936 A/G 5.19E-8 494 19.5 28.57 31.27 KM Plot
PRAD rs17351027 chr8:4987098 A/G 1.13E-6 494 26.37 28.73 31.4 KM Plot
PRAD rs17364330 chr15:76765385 A/T 8.54E-5 494 28.3 31.87 30.87 KM Plot
PRAD rs17368598 chr1:160146576 A/G 3.73E-5 478 31.87 26.23 26.37 KM Plot
PRAD rs17376095 chr15:47833691 A/C 5.52E-13 494 31.65 28.97 28.28 KM Plot
PRAD rs17388607 chr13:24033202 G/A 5.19E-6 487 30.97 31.82 20.53 KM Plot